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software [2018/10/23 10:18]
sisamakis
software [2019/05/21 18:03] (current)
admin [Data Analysis]
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 {{tag> software acquisition analysis}} {{tag> software acquisition analysis}}
- +~~TOC~~
-~~TOC~~ ​+
 ====== Software ====== ====== Software ======
  
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   * [[software:​FLIMFit]]. FLIMfit is an open source package for rapid analysis of large FLIM datasets. ​   * [[software:​FLIMFit]]. FLIMfit is an open source package for rapid analysis of large FLIM datasets. ​
 +  ​
 +  * [[https://​github.com/​zhengkaiyu/​FIMAS]] Fluorescent Imaging Analysis Software
  
   * [[https://​timetag.github.io|Extensible Time-tag Analyzer]]. ETA, the extensible time tag analyzer, is an event driven programming language with graphical user interface for analyzing, plotting, and fitting of time tagged data.[[https://​eta.readthedocs.io/​en/​latest/​intro.html|More info.]]   * [[https://​timetag.github.io|Extensible Time-tag Analyzer]]. ETA, the extensible time tag analyzer, is an event driven programming language with graphical user interface for analyzing, plotting, and fitting of time tagged data.[[https://​eta.readthedocs.io/​en/​latest/​intro.html|More info.]]
- + 
 +  * [[https://​pals3d.readthedocs.io/​en/​latest/​|Pals3D]] is a graphical application to support the use of a Time-Correlated Single Photon Counting system for application to Positron Annihilation Lifetime Spectroscopy. [[https://​github.com/​avancra/​Pals3D]] 
 + 
 + 
 === Libraries/​scripts/​readers === === Libraries/​scripts/​readers ===
   * [[https://​github.com/​PicoQuant/​PicoQuant-Time-Tagged-File-Format-Demos| Demo Code for reading PicoQuants PTU File format]]   * [[https://​github.com/​PicoQuant/​PicoQuant-Time-Tagged-File-Format-Demos| Demo Code for reading PicoQuants PTU File format]]
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       * Import Filter for pt3 files: [[http://​imagejdocu.tudor.lu/​doku.php?​id=plugin:​inputoutput:​picoquant_.pt3_image_reader:​start]]       * Import Filter for pt3 files: [[http://​imagejdocu.tudor.lu/​doku.php?​id=plugin:​inputoutput:​picoquant_.pt3_image_reader:​start]]
       * Import of ptu/pt3 image files (+intensity/​average lifetime stacks): [[https://​github.com/​ekatrukha/​PTU_Reader]]       * Import of ptu/pt3 image files (+intensity/​average lifetime stacks): [[https://​github.com/​ekatrukha/​PTU_Reader]]
-  *  [[https://​github.com/​qpl-public/​readPTU|A Python library to read PTU files]] \\ From the authors: "The main purpose of the library is to compute g<​sup>​2</​sup>​ from the photon arrival times as fast as possible, as our files often go into multi GB sizes. With a good SSD we can parse >3GB/s. It can also compute intensity time traces and post select photons based on that." 
  
-  ​* [[https://​github.com/​QuantumPhotonicsLab/​readPTU]] ​Probably same as above+ 
 +  ​* [[https://​github.com/​QuantumPhotonicsLab/​readPTU]] ​readPTU: a Python Library to Analyse Time Tagged Time Resolved Data [[http://​qpl.eps.hw.ac.uk/​]],​ [[https://​arxiv.org/​pdf/​1903.07112.pdf]]
  
   * [[https://​github.com/​trevhull/​ptuT3toT2|ptuT3toT2 - a program that converts ptu files from picoquant from T3 mode to T2 mode]]   * [[https://​github.com/​trevhull/​ptuT3toT2|ptuT3toT2 - a program that converts ptu files from picoquant from T3 mode to T2 mode]]
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     * [[https://​github.com/​skyjur/​picoharp300-curvefit-ui|TCSPC curve fitting for phd files (Python)]] ​     * [[https://​github.com/​skyjur/​picoharp300-curvefit-ui|TCSPC curve fitting for phd files (Python)]] ​
 +
 +    * [[ https://​github.com/​SumeetRohilla/​readPTU_FLIM | readPTU_FLIM]] Library for reading PTU files (works for MultiHarp, HydraHarp, PicoHarp, TimeHarp acquisition) as well as converting raw TTTR data to FLIM image data stack.
 +
 +    * [[https://​tpeulen.github.io/​tttrlib/​| tttrlib]] tttrlib is a low level, high performance API to read and process time-tagged-time resolved (TTTR) data
 ==== Data Acquisition ==== ==== Data Acquisition ====
  
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   * **pyPL**: wxpython integration of software and hardware for micro-photoluminescence measurements:​ WinSpec, PicoHarp, and Thorlabs/​APT piezos and stepper motors. \\  https://​github.com/​kaseyrussell/​pyPL   * **pyPL**: wxpython integration of software and hardware for micro-photoluminescence measurements:​ WinSpec, PicoHarp, and Thorlabs/​APT piezos and stepper motors. \\  https://​github.com/​kaseyrussell/​pyPL
   * PicoHarp Multiscan with Prior Stage: [[https://​bitbucket.org/​ywsong2/​uky_ptu_convert]] ​   * PicoHarp Multiscan with Prior Stage: [[https://​bitbucket.org/​ywsong2/​uky_ptu_convert]] ​
 +
  
 ===  Demos about Controlling PicoQuant Devices === ===  Demos about Controlling PicoQuant Devices ===
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   * https://​github.com/​PicoQuant/​HH400-v1.x-Demos   * https://​github.com/​PicoQuant/​HH400-v1.x-Demos
   * https://​github.com/​PicoQuant/​HH400-v3.x-Demos   * https://​github.com/​PicoQuant/​HH400-v3.x-Demos
 +
 +== MultiHarp 150 ==
 +  * [[https://​github.com/​PicoQuant/​MH150-Demos]]
  
 === Other === === Other ===
software.1540282722.txt.gz · Last modified: 2018/10/23 10:18 by sisamakis