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software [2019/03/14 11:59] adminsoftware [2019/05/14 08:13] admin
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 {{tag> software acquisition analysis}} {{tag> software acquisition analysis}}
- +~~TOC~~
-~~TOC~~ +
 ====== Software ====== ====== Software ======
  
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   * [[software:FLIMFit]]. FLIMfit is an open source package for rapid analysis of large FLIM datasets.    * [[software:FLIMFit]]. FLIMfit is an open source package for rapid analysis of large FLIM datasets. 
 +  
 +  * [[https://github.com/zhengkaiyu/FIMAS]] Fluorescent Imaging Analysis Software
  
   * [[https://timetag.github.io|Extensible Time-tag Analyzer]]. ETA, the extensible time tag analyzer, is an event driven programming language with graphical user interface for analyzing, plotting, and fitting of time tagged data.[[https://eta.readthedocs.io/en/latest/intro.html|More info.]]   * [[https://timetag.github.io|Extensible Time-tag Analyzer]]. ETA, the extensible time tag analyzer, is an event driven programming language with graphical user interface for analyzing, plotting, and fitting of time tagged data.[[https://eta.readthedocs.io/en/latest/intro.html|More info.]]
- + 
 +  * [[https://pals3d.readthedocs.io/en/latest/|Pals3D]] is a graphical application to support the use of a Time-Correlated Single Photon Counting system for application to Positron Annihilation Lifetime Spectroscopy. [[https://github.com/avancra/Pals3D]] 
 + 
 + 
 === Libraries/scripts/readers === === Libraries/scripts/readers ===
   * [[https://github.com/PicoQuant/PicoQuant-Time-Tagged-File-Format-Demos| Demo Code for reading PicoQuants PTU File format]]   * [[https://github.com/PicoQuant/PicoQuant-Time-Tagged-File-Format-Demos| Demo Code for reading PicoQuants PTU File format]]
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       * Import Filter for pt3 files: [[http://imagejdocu.tudor.lu/doku.php?id=plugin:inputoutput:picoquant_.pt3_image_reader:start]]       * Import Filter for pt3 files: [[http://imagejdocu.tudor.lu/doku.php?id=plugin:inputoutput:picoquant_.pt3_image_reader:start]]
       * Import of ptu/pt3 image files (+intensity/average lifetime stacks): [[https://github.com/ekatrukha/PTU_Reader]]       * Import of ptu/pt3 image files (+intensity/average lifetime stacks): [[https://github.com/ekatrukha/PTU_Reader]]
-  *  [[https://github.com/qpl-public/readPTU|A Python library to read PTU files]] \\ From the authors: "The main purpose of the library is to compute g<sup>2</sup> from the photon arrival times as fast as possible, as our files often go into multi GB sizes. With a good SSD we can parse >3GB/s. It can also compute intensity time traces and post select photons based on that." 
  
-  * [[https://github.com/QuantumPhotonicsLab/readPTU]] Probably same as above+ 
 +  * [[https://github.com/QuantumPhotonicsLab/readPTU]] readPTU: a Python Library to Analyse Time Tagged Time Resolved Data // 
 +  "readPTU is a python package designed to analyze time-correlated single-photon counting data. The use of the library promotes the storage of the complete time arrival information of the photons and full flexibility in post-processing data for analysis. The library supports the computation of time resolved signal with external triggers and second order autocorrelation function analysis can be performed using multiple algorithms that provide the user with different trade-offs with regards to speed and accuracy. Additionally, a thresholding algorithm to perform time post-selection is also available. The library has been designed with performance and extensibility in mind to allow future users to implement support for additional file extensions and algorithms without having to deal with low level details. We demonstrate the performance of readPTU by analyzing the second-order autocorrelation function of the resonance fluorescence from a single quantum dot in a two-dimensional semiconductor." [[http://qpl.eps.hw.ac.uk/]]
  
   * [[https://github.com/trevhull/ptuT3toT2|ptuT3toT2 - a program that converts ptu files from picoquant from T3 mode to T2 mode]]   * [[https://github.com/trevhull/ptuT3toT2|ptuT3toT2 - a program that converts ptu files from picoquant from T3 mode to T2 mode]]
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   * **pyPL**: wxpython integration of software and hardware for micro-photoluminescence measurements: WinSpec, PicoHarp, and Thorlabs/APT piezos and stepper motors. \\  https://github.com/kaseyrussell/pyPL   * **pyPL**: wxpython integration of software and hardware for micro-photoluminescence measurements: WinSpec, PicoHarp, and Thorlabs/APT piezos and stepper motors. \\  https://github.com/kaseyrussell/pyPL
   * PicoHarp Multiscan with Prior Stage: [[https://bitbucket.org/ywsong2/uky_ptu_convert]]    * PicoHarp Multiscan with Prior Stage: [[https://bitbucket.org/ywsong2/uky_ptu_convert]] 
-  * [[https://pals3d.readthedocs.io/en/latest/|Pals3D]] is a graphical application to support the use of a Time-Correlated Single Photon Counting system for application to Positron Annihilation Lifetime Spectroscopy.+
  
 ===  Demos about Controlling PicoQuant Devices === ===  Demos about Controlling PicoQuant Devices ===
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   * https://github.com/PicoQuant/HH400-v1.x-Demos   * https://github.com/PicoQuant/HH400-v1.x-Demos
   * https://github.com/PicoQuant/HH400-v3.x-Demos   * https://github.com/PicoQuant/HH400-v3.x-Demos
 +
 +== MultiHarp 150 ==
 +  * [[https://github.com/PicoQuant/MH150-Demos]]
  
 === Other === === Other ===
software.txt · Last modified: 2023/11/15 14:22 by admin