Differences

This shows you the differences between two versions of the page.

--- software [2019/03/14 11:59] – [Data Acquisition] admin
+++ software [2019/05/21 16:03] – [Data Analysis] admin
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 {{tag> software acquisition analysis}}
+~~TOC~~
-~~TOC~~
 ====== Software ======
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   * [[software:FLIMFit]]. FLIMfit is an open source package for rapid analysis of large FLIM datasets.
+  * [[https://github.com/zhengkaiyu/FIMAS]] Fluorescent Imaging Analysis Software
   * [[https://timetag.github.io|Extensible Time-tag Analyzer]]. ETA, the extensible time tag analyzer, is an event driven programming language with graphical user interface for analyzing, plotting, and fitting of time tagged data.[[https://eta.readthedocs.io/en/latest/intro.html|More info.]]
+  * [[https://pals3d.readthedocs.io/en/latest/|Pals3D]] is a graphical application to support the use of a Time-Correlated Single Photon Counting system for application to Positron Annihilation Lifetime Spectroscopy. [[https://github.com/avancra/Pals3D]]
 === Libraries/scripts/readers ===
   * [[https://github.com/PicoQuant/PicoQuant-Time-Tagged-File-Format-Demos| Demo Code for reading PicoQuants PTU File format]]
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       * Import Filter for pt3 files: [[http://imagejdocu.tudor.lu/doku.php?id=plugin:inputoutput:picoquant_.pt3_image_reader:start]]
       * Import of ptu/pt3 image files (+intensity/average lifetime stacks): [[https://github.com/ekatrukha/PTU_Reader]]
-  *  [[https://github.com/qpl-public/readPTU|A Python library to read PTU files]] \\ From the authors: "The main purpose of the library is to compute g<sup>2</sup> from the photon arrival times as fast as possible, as our files often go into multi GB sizes. With a good SSD we can parse >3GB/s. It can also compute intensity time traces and post select photons based on that."
-  * [[https://github.com/QuantumPhotonicsLab/readPTU]] Probably same as above
+  * [[https://github.com/QuantumPhotonicsLab/readPTU]] readPTU: a Python Library to Analyse Time Tagged Time Resolved Data [[http://qpl.eps.hw.ac.uk/]], [[https://arxiv.org/pdf/1903.07112.pdf]]
   * [[https://github.com/trevhull/ptuT3toT2|ptuT3toT2 - a program that converts ptu files from picoquant from T3 mode to T2 mode]]
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     * [[https://github.com/skyjur/picoharp300-curvefit-ui|TCSPC curve fitting for phd files (Python)]]
+    * [[ https://github.com/SumeetRohilla/readPTU_FLIM | readPTU_FLIM]] Library for reading PTU files (works for MultiHarp, HydraHarp, PicoHarp, TimeHarp acquisition) as well as converting raw TTTR data to FLIM image data stack.
+    * [[https://tpeulen.github.io/tttrlib/| tttrlib]] tttrlib is a low level, high performance API to read and process time-tagged-time resolved (TTTR) data
 ==== Data Acquisition ====
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   * PicoHarp Multiscan with Prior Stage: [[https://bitbucket.org/ywsong2/uky_ptu_convert]]
-  * [[https://pals3d.readthedocs.io/en/latest/|Pals3D]] is a graphical application to support the use of a Time-Correlated Single Photon Counting system for application to Positron Annihilation Lifetime Spectroscopy.
 ===  Demos about Controlling PicoQuant Devices ===
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   * https://github.com/PicoQuant/HH400-v1.x-Demos
   * https://github.com/PicoQuant/HH400-v3.x-Demos
+== MultiHarp 150 ==
+  * [[https://github.com/PicoQuant/MH150-Demos]]
 === Other ===